Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015830047.1_cds_XP_016504022.1_17509
CDS Infomation

[gene=LOC107822045] [db_xref=GeneID:107822045] [protein=E3 ubiquitin-protein ligase CHFR-like isoform X3] [protein_id=XP_016504022.1] [location=complement(join(126759..126890,127174..127237,127485..127545,128376..128463,128571..128636,129480..129580,129757..129864,130125..130218,130681..130767,131031..131154,131249..131340,131424..131482,132282..132379,140087..140237,142067..142094))] [gbkey=CDS]
Sequence

ATGCCAATGTTGTTGCCTTCCTTCCACTTACCGGTGGATTCTCACTATTCAGAAATTGAG
TTGAGGCTGAAGGAGACTGTAATATGTAGTGAAGTGAAGAATTCCTCTTCTGAAAAGCAA
GAATGGTGTAAGATAACAAGGAATGTGGATCTAGTTTCTGCCATGATGCAAAATAAGAGT
TCAAAAGCAATTGTTGTTGATGAGACGGTGGTTCAGGATGAGCATGTTGCTGTAATTAAG
TGTGGCAGTGAAATTTCTCTGGGCCCCAGTGATGAAGGTTTTGTGAAATACCGACTCGAA
ATGATGCCCACTGAGGAATCTCGCAGATATATGCAGATTTCTCTCGATGTTGAGTATGCA
AAATGCTGTATCTGCTTAAATATCTGGCATGACGTTGTCACAGCTGCACCTTGCCTTCAC
AATTTCTGTAATGGATGCTTTTCAGAGTGGCTAAGGAGGTCTCAAGAGAGGCGTTCAAGT
GTTTTATGTCCCCAGTGCAGAGCAGTTGTACAGTTTGTTGGAAGAAACCATTTTTTCCAT
AACATTGAGGAAGATATACTGCTTGCGGATCCTTCCTTGAAACGCTCGAGTGAAGATGTT
GTGCTGCTTGATTCCTGTGCATCAATAAAATCACCTCTTGAGCAGGTCCTCGGCAGTAGA
AAAAGTCGCCGGAAGAGGGAACGTTCTCCATCAGATGCAGCAAATAGTTGGGAGCCTTTA
TGCCCTCAGTGTGGCATTGAATTTGGAGGTTTTCAGTGTGATGAAAGCACAGTTCATCTT
CAATGTCAAGCATGTGGTGGAATGATGCCCTCTCGATTAAACATTGGAATGCAACAACAC
TGTTTGGGATGTGATCGAGCATTTTGTGCTGCTTATTGGCATTCTCAGGGAGTCAATGGA
AGCAATTTACATCCACTTTGCAGTCCTGAAACTTTCAAGCCTATTGCTGAACGTACAATT
ACTAGAATACCCTCCTTGGCACATGAGAATAATCATTATGAACAAAATATTACTGAAAGA
TGCATTAGAGAGATGACAAGGTCGTTGCAGGATGTGGTAGCTGATTGGATTTTGAAGCTT
GATAAGCGGGAGATAGATCGCACAAGGATGCCTTTGAATCATGCTGAGATGATAACTTCC
CGGACATATACTTGTAGTGAGTGCTATGACAAGTTAGTCTCATTCCTATTGTACTGGTTT
AGAGTTACAATGACAGCACATCTTTTACCTTCAGAGGTAGCACAAAGAGAAGACTGCTGG
TATGGATATGCTTGTCGCACACAACACCATAACCAAGAGCATGCTCGCAAAAGGAACCAT
GTCTGCCGGCCAACAAGGGGTAGTCATATGTAG

Peptide Sequence

PEP ID

XP_016504022.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase CHFR-like isoform X3 [Nicotiana tabacum]
Sequence

MPMLLPSFHLPVDSHYSEIELRLKETVICSEVKNSSSEKQEWCKITRNVDLVSAMMQNKS
SKAIVVDETVVQDEHVAVIKCGSEISLGPSDEGFVKYRLEMMPTEESRRYMQISLDVEYA
KCCICLNIWHDVVTAAPCLHNFCNGCFSEWLRRSQERRSSVLCPQCRAVVQFVGRNHFFH
NIEEDILLADPSLKRSSEDVVLLDSCASIKSPLEQVLGSRKSRRKRERSPSDAANSWEPL
CPQCGIEFGGFQCDESTVHLQCQACGGMMPSRLNIGMQQHCLGCDRAFCAAYWHSQGVNG
SNLHPLCSPETFKPIAERTITRIPSLAHENNHYEQNITERCIREMTRSLQDVVADWILKL
DKREIDRTRMPLNHAEMITSRTYTCSECYDKLVSFLLYWFRVTMTAHLLPSEVAQREDCW
YGYACRTQHHNQEHARKRNHVCRPTRGSHM

Transcript Sequence

Gene sequence data has not been registered.